马萨里克大学PhD position in Improving Evaluation Frameworks for Microscopy Image Analysis申请条件要求-申请方
主办方
马萨里克大学
PhD直招介绍
About the Project
PhD Position: Improving Evaluation Frameworks for Microscopy Image Analysis
Faculty of Informatics, Masaryk University (FI MU), Brno, Czech Republic
Supervisor: Pavel Matula
Host centre: Centre for Biomedical Image Analysis (CBIA), FI MU
Study programme: Ph.D. in Informatics
Form: Full-time (preferred)
Start: Spring 2027
Application deadline: November 30, 2026
Research Topic
We invite applications for a PhD position focused on next-generation evaluation frameworks for microscopy image analysis, combining ideas from computer vision, machine learning, and biological imaging.
The project will be carried out within the Centre for Biomedical Image Analysis (CBIA( https://cbia.fi.muni.cz/ )) at the Faculty of Informatics, Masaryk University. CBIA offers a multidisciplinary environment working at the interface of computer science, microscopy, image analysis, and biomedical research.
The PhD research will address current limitations in how segmentation, tracking, and lineage-reconstruction methods are assessed in microscopy. The aim is to design biologically meaningful, uncertainty-aware, and robust evaluation approaches that better reflect the actual needs of cell biology and biomedical imaging.
Possible Research Directions
Evaluation metrics for segmentation, tracking, and lineage reconstruction
Modelling inter-annotator variability & imperfect ground truth
Uncertainty-aware scoring and confidence intervals for algorithm performance
Biology-driven composite metrics (shape, cell counts, division timing, migration behaviour)
Stress-testing pipelines under noise, bleaching, drift, and domain shift
Benchmark design and simulation of realistic error modes
Development of open-source tools for reproducible evaluation
The exact topic will be specified jointly with the supervisor based on the candidate’s background and interests.
Programme & Study Environment
The position is embedded in the four-year doctoral programme in Informatics at FI MU, delivered in English or Czech.
Doctoral students are expected to:
Conduct independent research under supervision
Publish in international venues
Participate in conferences and research stays
Contribute to the scientific community of CBIA and FI MU
马萨里克大学 PhD position in Improving Evaluation Frameworks for Microscopy Image Analysis项目有没有奖学金，是不是全奖Phd招生，下面我们一起看一下【大学名称】Phd的奖学金资助情况
项目资助情况
Funding & Employment Conditions
Tuition fee: 0 CZK (also for English-language doctoral study)
Standard funding package (full-time students):
Basic doctoral scholarship: 18,000 CZK / month
Employment contract (20% FTE): ~7,000 CZK net / month
Publication-performance scholarship: up to 7,000 CZK / month
Active PhD students typically achieve ~32,000 CZK net monthly income during the standard study period.
马萨里克大学Phd申请条件和要求都有哪些？PhD position in Improving Evaluation Frameworks for Microscopy Image Analysis项目是不是全奖？有没有奖学金？下面我们一起看一下马萨里克大学申请Phd直招需要具备哪些条件和要求，以及托福、雅思语言成绩要到多少才能申请。
申请要求
Candidate Profile
Required
MSc in Computer Science, Applied Mathematics, Biomedical Engineering, or related field
Solid background in machine learning / image analysis
Programming skills (Python)
Strong mathematical foundation
Preferred
Experience with microscopy image analysis or biomedical imaging
Knowledge of image-processing metrics, benchmarking, or statistical evaluation
Familiarity with segmentation / tracking pipelines
C++ / GPU / HPC experience
Publication or open-source contributions
报名方式
招生人信息
Assoc Prof PaM Matula
邮箱：pam@fi.muni.cz
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